PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006400-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 1253aa    MW: 138515 Da    PI: 9.1619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006400-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-085489340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                       W++e+ + +++a +++G++ Wk++++++  +Rt +++
  PSME_00006400-RA 54 QWSKEDLQNFYEAYRKYGKD-WKKVSAMIC-NRTMEMV 89
                      6*****************99.*********.***8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-104999IPR009057Homeodomain-like
PROSITE profilePS512939.20650101IPR017884SANT domain
SMARTSM007175.4E-55199IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-45393IPR009057Homeodomain-like
PfamPF002491.8E-75489IPR001005SANT/Myb domain
CDDcd001674.15E-65589No hitNo description
SMARTSM011359.5E-57690791IPR033471DIRP domain
PfamPF065841.1E-32690790IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1253 aa     Download sequence    Send to blast
GGLINITKMA SSRKPRIASR RTGKATEGAA EKDDDGTYKN RQRKRKLSDM LGPQWSKEDL  60
QNFYEAYRKY GKDWKKVSAM ICNRTMEMVE ALYSMNKAYL SLPDGAASAA GLIAMMIDHY  120
NILEGSNSDR DSSDGFGASG LPQKQTRFKK KFTSTNNFDR SYSDLLQCRS GPSNYGCPSP  180
VKKRRSGGSR PRAVGKRTPR FPVSYALEKQ NSEAVLSGKQ GLVSDDDHDD YDVAKAVALT  240
LAEASQRAAS PQVSRTPSRI TSQMRLSPVQ NGDLKGSYAR NESGGSAIKL TGSTMDEGSP  300
EGSQESKEVG NGGITKTDEQ IIPGETRMKA AHNLKSRVRK PPLKKFKTHG LKQECIDDVK  360
EEFSCTEEGV GVKDEKDELM DTEADYGRKR KKPLPQRSRK RSRQLFSGDE NFGLDALATL  420
ADLSLNGLLP SPTVESESSA QVKEEKDNTI LEKGDRNARQ VRVLDLHEEK PRISSNRERG  480
SLYKASVNSV ELVTKEKHHE DGKTIVLEGG HVSPVADIKK RRRKPTAPKV QQLEALGETC  540
SGEIQKLEAS IGDGAKFRNK PKKASNTHTI SKQGRLAKTL PMSAEDPEFT GSGGPVSDPG  600
IQNSTASQVS LPTKLRSRRK MALEKVLASK PVECPEKCEN IVCNEQSERQ NNVTVFCPHT  660
VTDRASSLKA KFIHCLSSAK LRRWCTYEWF YSAIDWPWFT RNEFVEYLNH AGLGHVPRLT  720
RVEWGVIRSS LGKPRRLSKR FLQEEREKLE QYRESVRKHY NEVRAGICDG LPTDLARPLS  780
VGQRVIACHP KSREVHDGNI LTVDRNRCRV QFDRPELGVE FVLDIDCMPL NPLENMPEAL  840
RRKSMVLDGL GQTFDDSQLE MKSRGLGVGV SPKTIQNDRV DKSAADSSFG PPSKYSFNTL  900
LKQAKGDTVD SVIQAKAAAN EVVVATQQAL YNQPCTLAQI QAKEADIRAL ADLTRALDKK  960
EAILVELRNM NDEVDGHKKN AEAMRNSENF RKQYATVVHQ LKDTNEQVTS ALVYLRQRNT  1020
YQENSIPPWH RVIPLPVAVG GSSSMDPSAP ITSETCPQIG EIINNSGRKA RMLIDAAIQA  1080
MSSLKEGDDK LAMIGGSLDP MTYVHAGVDS GNMGVKSGHQ FDSSRCADQE TLSLCENSTA  1140
SLGSELIADN ATDVQQKGTL YRKEAPVLSE LIASCVAALF TIQTCTERQY PPSDVAQMLD  1200
NAVTSLQPYS SQNLIIYREI QQSMGVIKNQ ILALIPAHTS ISVSTEIPAV PRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387391RKRKK
2518523KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6764590.0EF676459.1 Picea sitchensis clone WS02738_G12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806734.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X2
TrEMBLW1NU390.0W1NU39_AMBTC; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding